Information for 3-TGAGTAATTAGGC (Motif 4)

A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
Reverse Opposite:
A C T G A G T C A T G C C G A T C G T A C G T A G A C T C A G T C G T A G T A C A C G T T A G C T C G A
p-value:1e-16
log p-value:-3.785e+01
Information Content per bp:1.785
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.4 +/- 26.3bp
Average Position of motif in Background41.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VAX2/MA0723.1/Jaspar

Match Rank:1
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:TGAGTAATTAGGC
---NTAATTAG--
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGAGTAATTAGGC---
GTACTAATTAGTGGCG
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C A C G T A C G T A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

EMX1/MA0612.1/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TGAGTAATTAGGC
--NNTAATTAGN-
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T T C A G A T C G G A C T G T C A G C T A G C A T A G C T C T G A C T A G A C T G A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.75
Offset:4
Orientation:forward strand
Alignment:TGAGTAATTAGGC
----TAATTAGN-
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T

VAX1/MA0722.1/Jaspar

Match Rank:5
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TGAGTAATTAGGC
---NTAATTAG--
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T A C G T C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:6
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TGAGTAATTAGGC
---NTAATTAG--
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TGAGTAATTAGGC
--GCTAATTAGC-
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T

VSX1/MA0725.1/Jaspar

Match Rank:8
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:TGAGTAATTAGGC
---NTAATTAG--
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T A C G T T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGAGTAATTAGGC---
GTAGTAATTAATGGAA
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C A C G T A C G T A C G T
A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A

PDX1/MA0132.2/Jaspar

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:TGAGTAATTAGGC
---GTAATTAG--
 A C G T A C T G G T C A A C T G A C G T G C T A C T G A A C G T A C G T C G T A A T C G C T A G G T A C
A C G T A C G T A C G T T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T A C G T