Information for 8-AGAACATAAATCGGCA (Motif 17)

C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C T C A G C G T A A C G T C G A T A C G T G T C A A C G T A C T G C A G T A G C T A G T C C G A T
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.895
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.2 +/- 21.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGAACATAAATCGGCA
TGNCCATATATGGTCA
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAACATAAATCGGCA
-GGCCATAAATCA---
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAACATAAATCGGCA
-GGCCATAAATCA---
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGAACATAAATCGGCA
-GGCCATAAATCAC--
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAACATAAATCGGCA
--GCCATAAATCA---
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

PB0184.1_Tbp_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGAACATAAATCGGCA
GNNCGCTTAAATCGG--
 A C G T C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:AGAACATAAATCGGCA--
--------NNTTGGCANN
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

MF0008.1_MADS_class/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGAACATAAATCGGCA
---CCATATATGG---
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAACATAAATCGGCA-
-GAAGATCAATCACTTA
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A A C G T
A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGAACATAAATCGGCA
-NGYCATAAAWCH---
 C G T A A C T G C T G A G T C A A G T C C G T A A C G T C G T A C G T A C G T A C G A T A G T C A C T G A C T G A G T C C G T A
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T