Information for 9-TGATTTACGG (Motif 14)

G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G
Reverse Opposite:
G A T C G A T C T C A G G C A T T G C A G C T A C T G A A C G T A T G C C G T A
p-value:1e-11
log p-value:-2.566e+01
Information Content per bp:1.673
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.69%
Number of Background Sequences with motif2021.2
Percentage of Background Sequences with motif4.21%
Average Position of motif in Targets47.2 +/- 27.6bp
Average Position of motif in Background50.5 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTACGG--
NTGATTTATGGCC
 A C G T G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TGATTTACGG--
TGATTTATGGCC
 G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGATTTACGG-
TGATTTATGGC
 G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TGATTTACGG--
TGATTTATGGCC
 G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TGATTTACGG--
DGWTTTATGRCN
 G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGATTTACGG
TGATTGATGA
 G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGATTTACGG
CNGTGATTTN---
 A C G T A C G T A C G T G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGATTTACGG--
TGATTRATGGCY
 G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGATTTACGG
TTTGATTGATGN
 A C G T A C G T G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTACGG-
ATGATKGATGRC
 A C G T G C A T T A C G T G C A G A C T C G A T A C G T C G T A A G T C C A T G C T A G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C