Information for 2-GCAAAGAACACTG (Motif 4)

T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G
Reverse Opposite:
G T A C G C T A A C T G A G C T A C T G A G C T A G C T A G T C G A C T A C G T C A G T A C T G A T G C
p-value:1e-13
log p-value:-3.190e+01
Information Content per bp:1.699
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif116.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets45.7 +/- 26.6bp
Average Position of motif in Background48.4 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCAAAGAACACTG-
----AAAACAATGG
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAAAGAACACTG
-CCAGGAACAG--
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCAAAGAACACTG-
----VRAACAATGG
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAAAGAACACTG-
AACAAACAACAAGAG
 A C G T T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCAAAGAACACTG--
-----GAACAATGGN
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCAAAGAACACTG-----
--AATGAACAATGGAATT
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAAAGAACACTG-----
-ATAAGAACAAAGGACTA
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCAAAGAACACTG--
-----RAACAATGGN
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCAAAGAACACTG-
----GGAACAAAGR
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCAAAGAACACTG-
-----GAACAATGG
 T A C G T G A C G T C A T C G A C T G A T C A G T C G A C T G A T A G C C T G A T A G C C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G