Information for 16-GAGAGAVCAGCCATGA (Motif 23)

A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
Reverse Opposite:
A C G T A T G C G T C A A C G T A C T G A C T G A G T C C G A T C T A G A C G T A C G T G T A C A C G T A T G C A G C T G T A C
p-value:1e-9
log p-value:-2.271e+01
Information Content per bp:1.783
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 18.4bp
Average Position of motif in Background47.9 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GAGAGAVCAGCCATGA
-------CTGCCCGCA
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAGAGAVCAGCCATGA
-TGACANARRCCAGRC
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GAGAGAVCAGCCATGA
-----GTCCGCCATTA
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GAGAGAVCAGCCATGA
GACAGAGATATCAGTGT---
 A C G T A C G T A C G T A C G T A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GAGAGAVCAGCCATGA
---GGACCACCCACG-
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAGAGAVCAGCCATGA
TGGCAGNCTGCCAG--
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GAGAGAVCAGCCATGA
----YAACBGCC----
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAVCAGCCATGA
TTGGCANNNTGCCAAG-
 A C G T A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:GAGAGAVCAGCCATGA
--------TGCCAA--
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GAGAGAVCAGCCATGA
------CGTGCCAAG-
 A C T G C T G A A T C G C G T A A C T G G T C A T C G A A G T C G C T A C T A G A G T C A G T C G T C A A C G T A T C G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T