Information for 6-CTGGCAGGTCACCGCA (Motif 8)

A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
Reverse Opposite:
C G A T A C T G T G A C A C T G A C T G A C G T A T C G C G T A A T G C A G T C C G A T A C T G A G T C A T G C G T C A A C T G
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.776
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.1 +/- 25.3bp
Average Position of motif in Background42.7 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGGCAGGTCACCGCA
----AAGGTCAC----
 A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGTCACCGCA
CTTGGCAA---------
 A C G T A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGTCACCGCA
VBTGWCAGCB-------
 A C G T A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGTCACCGCA
GTGCCACGTCATCA--
 A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CTGGCAGGTCACCGCA
-----AGGTCA-----
 A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGTCACCGCA
TTGACAGC--------
 A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGGCAGGTCACCGCA
---TRAGGTCA-----
 A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCAGGTCACCGCA
GGATTGACAGGTCNTT---
 A C G T A C G T A C G T A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T A C G T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTGGCAGGTCACCGCA
-TGACAGGTGTCA---
 A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGGTCACCGCA
TNNGGGCAG---------
 A C G T A C G T A G T C A C G T A T C G C T A G A G T C C G T A A C T G A T C G C G A T A T G C C G T A A G T C G T A C A C T G G T A C C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T