Information for 9-CTTTTAGACG (Motif 24)

A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G
Reverse Opposite:
G T A C A C T G A C G T A G T C A C G T C T G A C G T A C G T A C G T A A T C G
p-value:1e-7
log p-value:-1.776e+01
Information Content per bp:1.875
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif47.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets43.6 +/- 31.5bp
Average Position of motif in Background49.1 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAGACG-
CCTTTTATAGNC
 A C G T A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTAGACG
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTAGACG
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAGACG
ANCGTTTANN--
 A C G T A C G T A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTTTAGACG
CGTCTAGACA
 A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAGACG
NNCAATTANN--
 A C G T A C G T A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTTTTAGACG-
---BCAGACWA
 A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTTTTAGACG---
---CCAGACRSVB
 A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTTTTAGACG-
-TTTTATKRGG
 A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PH0065.1_Hoxc10/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTAGACG---
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A T G C C G A T A C G T A C G T A G C T C G T A C T A G C G T A A G T C C A T G A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A