Information for 5-GGGTAATGGC (Motif 15)

C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C
Reverse Opposite:
A C T G T G A C G T A C C G T A A C G T A G C T G C T A A G T C G T A C G A T C
p-value:1e-8
log p-value:-2.026e+01
Information Content per bp:1.662
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif6.28%
Number of Background Sequences with motif828.4
Percentage of Background Sequences with motif1.69%
Average Position of motif in Targets54.9 +/- 26.2bp
Average Position of motif in Background49.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GGGTAATGGC-
-GTTAATGGCC
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GGGTAATGGC----
---TAATGGCGGNC
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GGGTAATGGC
-GKTAATGR-
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GGGTAATGGC
--NTAATTGN
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGGTAATGGC
--NTAATTGG
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGGTAATGGC
--CTAATKGV
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

HOXA2/MA0900.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGGTAATGGC-
-GNTAATTANN
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C A C G T
A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGGTAATGGC-
-GCTAATTGCT
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C A C G T
A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

HOXB3/MA0903.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGGTAATGGC-
-NNTAATTANN
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C A C G T
A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGGTAATGGC--
--NTAATKGTTT
 C T A G C A T G T C A G C G A T T C G A T G C A G C A T C A T G A C T G T A G C A C G T A C G T
A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T