Information for 9-RTCYCTCCAGACCGCC (Motif 21)

C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
Reverse Opposite:
A C T G A T C G G A T C C A T G A T C G A C G T A G T C A C G T A C T G T A C G C G T A C T A G C T A G C T A G C G T A A G C T
p-value:1e-8
log p-value:-1.846e+01
Information Content per bp:1.762
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.0 +/- 21.1bp
Average Position of motif in Background45.7 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:RTCYCTCCAGACCGCC
------CCAGACRSVB
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:RTCYCTCCAGACCGCC
------CCAGACAG--
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RTCYCTCCAGACCGCC--
-CAAATCCAGACATCACA
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:RTCYCTCCAGACCGCC
------BCAGACWA--
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RTCYCTCCAGACCGCC
---ATGCCAGACN---
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:RTCYCTCCAGACCGCC-----
----CATAAGACCACCATTAC
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------RTCYCTCCAGACCGCC
TTTTTTTTTTTTTTCAGGTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RTCYCTCCAGACCGCC
RSCACTYRAG------
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RTCYCTCCAGACCGCC
-TCCCNNGGGACN---
 C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T A C G T A C G T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--RTCYCTCCAGACCGCC
GGNTCTCGCGAGAAC---
 A C G T A C G T C T G A C G A T A G T C A G T C A G T C C G A T A G T C A G T C C G T A A C T G C G T A A T G C G A T C C T A G A T G C G T A C
T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C A C G T A C G T A C G T