Information for 5-CCAGCAGCTTCTCACA (Motif 17)

G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C T G A A C T G C T G A C G T A A C T G T A G C A G C T A C T G A G T C A C G T A C T G C A T G
p-value:1e-4
log p-value:-1.014e+01
Information Content per bp:1.925
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif33.77%
Number of Background Sequences with motif12261.4
Percentage of Background Sequences with motif25.38%
Average Position of motif in Targets49.0 +/- 25.2bp
Average Position of motif in Background49.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAGCTTCTCACA
ADGGYAGYAGCATCT----
 A C G T A C G T A C G T G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGCAGCTTCTCACA
--AGCAGCTGCT----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGCTTCTCACA
CTCAGCAGCTGCTACTG
 A C G T G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAGCAGCTTCTCACA
NNAGCAGCTGCT----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCAGCAGCTTCTCACA
--CGCAGCTGCG----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGCTTCTCACA
-CAGCAGCTGN-----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGCTTCTCACA
-CAGCTGNT-------
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGCTTCTCACA
-NNGCAGCTGTC----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGCTTCTCACA
-NNGCAGCTGTT----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CCAGCAGCTTCTCACA
------GCTTCC----
 G A T C A G T C C G T A A C T G A G T C C T G A A T C G A G T C A C G T A G C T A G T C A G C T A G T C C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T