Information for 6-TGACCTAACTTGA (Motif 8)

A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
Reverse Opposite:
G A C T A G T C C G T A C G T A A C T G C A G T A C G T C T G A A T C G T A C G C G A T G T A C C G T A
p-value:1e-11
log p-value:-2.566e+01
Information Content per bp:1.677
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif72.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets52.2 +/- 28.0bp
Average Position of motif in Background57.6 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA--
TGWCCTCARNTGACC
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A A C G T A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA----
TGACCTTTCGTGACCTT
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A A C G T A C G T A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA
TGACCT-------
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA
TGACCTYA-----
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA
TGACCTARTT---
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTAACTTGA
TTGACCTANTTATN
 A C G T A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA
TGACCYCT-----
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA
TGACCTTGAT---
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGACCTAACTTGA
NNCNTGACCCCGCTCT-
 A C G T A C G T A C G T A C G T A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGACCTAACTTGA---
TGACCTNTAGTAACCC
 A C G T A C T G G C T A A G T C A T G C A G C T T G C A G T C A G T A C G C A T C G A T T A C G C G T A A C G T A C G T A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C