Information for 4-ATAGGTCAGT (Motif 21)

G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
Reverse Opposite:
C T G A A T G C A C G T A T C G C G T A A G T C A G T C A C G T C G T A C G A T
p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.854
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif105.4
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets64.5 +/- 29.3bp
Average Position of motif in Background51.0 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:ATAGGTCAGT
--AGGTCA--
 G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--ATAGGTCAGT
ATCAAGGTCA--
 A C G T A C G T G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----ATAGGTCAGT
ANGNAAAGGTCA--
 A C G T A C G T A C G T A C G T G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-ATAGGTCAGT
CAAAGGTCAG-
 A C G T G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ATAGGTCAGT
TRAGGTCA--
 G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATAGGTCAGT
AGRGGTCA--
 G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----ATAGGTCAGT--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----ATAGGTCAGT--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ATAGGTCAGT
AAYTAGGTCA--
 A C G T A C G T G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:ATAGGTCAGT--
-CAGGTAAGTAT
 G C T A G C A T G T C A A C T G A C T G A C G T A T G C C G T A A T C G A G C T A C G T A C G T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T