Information for 3-TGGCAAAGCGGGA (Motif 3)

A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A
Reverse Opposite:
C G A T A G T C T A G C A G T C A C T G G T A C A C G T A C G T A C G T A T C G A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.833e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 24.1bp
Average Position of motif in Background54.4 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGGCAAAGCGGGA--
GAGCACAGCAGGACA
 A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGGCAAAGCGGGA----
--DCHCAGCAGGRGGCC
 A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TGGCAAAGCGGGA--
---CACAGCAGGGGG
 A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGCAAAGCGGGA--
CCACACAGCAGGAGA
 A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAAGCGGGA
CTTGGCAA-------
 A C G T A C G T A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGGCAAAGCGGGA
--DCTCAGCAGG-
 A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGCAAAGCGGGA--
CCACACAGCAGGAGA
 A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAAAGCGGGA
ARNTGACA--------
 A C G T A C G T A C G T A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAF::NFE2/MA0501.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAAGCGGGA-
ATGACTCAGCAATTT
 A C G T A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A A C G T
T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A C A T G A T G C C T G A C T G A C G A T G C A T G A C T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAAAGCGGGA
NNTTGGCANN------
 A C G T A C G T A C G T A C G T A C T G C T A G A T G C C G T A G T C A G T C A A C T G A G T C T C A G A C T G T C A G C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T