Information for 18-SCMAGGKAGACMA (Motif 28)

A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A G T C A C G T G T A C A G T C A G T C A C G T A C G T A C T G A T G C
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.884
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.5 +/- 25.4bp
Average Position of motif in Background29.7 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXF2/MA0030.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:SCMAGGKAGACMA-
CAAACGTAAACAAT
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A A C G T
A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SCMAGGKAGACMA
-VCAGGTRDRY--
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A
A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:SCMAGGKAGACMA
-----BCAGACWA
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Foxj3/MA0851.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SCMAGGKAGACMA----
AAAAAGTAAACAAACAC
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SCMAGGKAGACMA----
AAAAAGTAAACAAACAC
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

Foxk1/MA0852.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SCMAGGKAGACMA----
AAAATGTAAACAAACAG
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SCMAGGKAGACMA----
AAAATGTAAACAAACAG
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:SCMAGGKAGACMA----
-CGAAGCACACAAAATA
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

FOXO3/MA0157.2/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:SCMAGGKAGACMA
-----GTAAACAA
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T C T A G A C G T T G C A G T C A G T C A G T A C G T C A C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:SCMAGGKAGACMA
-CCAGGAACAG--
 A T C G A G T C G T C A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A G T C G T A C C G T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T