Information for 3-RGARCTGTCC (Motif 10)

C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C
Reverse Opposite:
C T A G C T A G T C G A G T A C C G T A A C T G A G T C C A G T G T A C A G T C
p-value:1e-10
log p-value:-2.493e+01
Information Content per bp:1.687
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif10.96%
Number of Background Sequences with motif1554.1
Percentage of Background Sequences with motif4.02%
Average Position of motif in Targets51.9 +/- 26.5bp
Average Position of motif in Background50.1 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RGARCTGTCC
---GCTGTG-
 C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:RGARCTGTCC----------
GGAGCTGTCCATGGTGCTGA
 C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RGARCTGTCC-----------
GGCGCTGTCCATGGTGCTGAA
 C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Myod1/MA0499.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RGARCTGTCC--
TGCAGCTGTCCCT
 A C G T C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C A C G T A C G T
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

Tcf12/MA0521.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--RGARCTGTCC
NNGCAGCTGTT-
 A C G T A C G T C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--RGARCTGTCC
NNGCAGCTGTC-
 A C G T A C G T C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RGARCTGTCC----
----CTGTTCCTGG
 C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RGARCTGTCC
ACAGCTGTTV
 C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C
T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RGARCTGTCC----
AAAGACCTGTCAATCC
 A C G T A C G T C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RGARCTGTCC-----
NNNCAGCTGTCAATATN
 A C G T A C G T C T A G A C T G G T C A T C A G A G T C C G A T A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C