Information for 23-GTTGCCAGGCAAC (Motif 47)

A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A C G T A A G T C
p-value:1e-2
log p-value:-6.600e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets19.0 +/- 0.0bp
Average Position of motif in Background7.0 +/- 1.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAGGCAAC-
KGTTGCTAGGMAACA
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCAGGCAAC
CTGTTGCTAGGS---
 A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCAGGCAAC
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCAGGCAAC
NCCGTTGCTANGNGN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAGGCAAC-
GTTGCCATGGNAAC
 A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCCAGGCAAC---
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTGCCAGGCAAC
-TTGCCAAG----
 A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAGGCAAC
GGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAGGCAAC
AGGTGHCAGACA--
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAGGCAAC
AGGTGNCAGACAG-
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T