Information for 22-AAGTGGTAATATATGT (Motif 41)

C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T
p-value:1e-3
log p-value:-7.293e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGTGGTAATATATGT
AGGTGTTAAT------
 C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGGTAATATATGT
TTAAGTGGT---------
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAGTGGTAATATATGT
NTCAAGTGGN---------
 A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGGTAATATATGT
TTAAGTGGN---------
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AAGTGGTAATATATGT-
-------AACATATGTC
 C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGTGGTAATATATGT-
-TAAGGTAATAAAATTA
 C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGTGGTAATATATGT-
-AAAGGTAATAAAATTT
 C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

OLIG1/MA0826.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AAGTGGTAATATATGT-
-------AACATATGTT
 C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A G T A C C T G A A C G T T G C A G C A T A C T G A C G T G A C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AAGTGGTAATATATGT
NTNNTTAAGTGGTTANN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAGTGGTAATATATGT
TAAAGTCGTAAAACAT--
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T A C G T A C G T