Information for 5-GCCACTATTA (Motif 33)

A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.293e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.0 +/- 0.0bp
Average Position of motif in Background40.2 +/- 2.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARX1/MA0875.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCCACTATTA-
---GCAATTAG
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCCACTATTA-
NNTNNCAATATTAG
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCCACTATTA-
NNTNNCAATATTAG
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCCACTATTA---
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCACTATTA-
-AAACMATTAN
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCACTATTA--
--NNCAATTANN
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Nkx2-5/MA0063.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCCACTATTA-
----CAATTAA
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCACTATTA-
---CCAATTAA
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

Dlx3/MA0880.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCCACTATTA-
---CCAATTAC
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCCACTATTA--
----YCATTAMC
 A C T G A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C