Information for 6-WWSGGCAGKSAAG (Motif 12)

C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A T G C G T A C A G T C A C G T A C T G A G T C A G T C A T G C C G A T C G A T
p-value:1e-7
log p-value:-1.718e+01
Information Content per bp:1.850
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif9.38%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.7 +/- 33.3bp
Average Position of motif in Background56.1 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:WWSGGCAGKSAAG---
-----AAGGCAAGTGT
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-WWSGGCAGKSAAG
TNNGGGCAG-----
 A C G T C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:WWSGGCAGKSAAG------
----SCAGYCADGCATGAC
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5/MA0014.2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:WWSGGCAGKSAAG------
GAGGGCAGCCAAGCGTGAC
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----WWSGGCAGKSAAG
NNNNTTGGGCACNNCN-
 A C G T A C G T A C G T A C G T C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:WWSGGCAGKSAAG-
--CGGAAGTGAAAC
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G A C G T
A C G T A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-WWSGGCAGKSAAG
NGTGGGCAT-----
 A C G T C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:WWSGGCAGKSAAG--
---GGAAGTGAAAST
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

E2F8/MA0865.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:WWSGGCAGKSAAG
TTTGGCGGGAAA-
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G
C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:WWSGGCAGKSAAG-------
----GCAGCCAAGCGTGACN
 C G T A C G T A A T C G A C T G A C T G A G T C C G T A A C T G C A G T A T C G C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C