Information for 5-GCTTTATTAC (Motif 6)

C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C
Reverse Opposite:
A T C G A G C T C T G A T C G A G C A T C G T A C G T A T C G A C T A G G A T C
p-value:1e-14
log p-value:-3.277e+01
Information Content per bp:1.667
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.88%
Number of Background Sequences with motif328.8
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets51.4 +/- 28.4bp
Average Position of motif in Background49.8 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCTTTATTAC-
NTTTTATTACN
 C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCTTTATTAC
NTTTTATGAC
 C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCTTTATTAC
-TTTTATTGC
 C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATTAC-
DGWTTTATGRCN
 A C G T C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTATTAC----
NAATTTTATTACCNNN
 A C G T A C G T C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCTTTATTAC--
-TTTTATGGCTN
 C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTATTAC---
TNAATTTTATTACCTN
 A C G T A C G T A C G T C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCTTTATTAC
TTTTTATTGC
 C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTATTAC----
NAATTTTATTACCTNN
 A C G T A C G T C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C A C G T A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCTTTATTAC
TTTTTATTGG
 C T A G G A T C A G C T G C A T G C A T C G T A A G C T G A C T T C G A T A G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G