Information for 25-CACGTAAGGG (Motif 40)

A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C G T C G T A A G T C A C T G A C G T A C T G
p-value:1e-6
log p-value:-1.476e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.1 +/- 30.5bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CACGTAAGGG
BGCACGTA----
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CACGTAAGGG
GCACGTAY---
 A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T

GMEB2/MA0862.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CACGTAAGGG
TTACGTAA---
 A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CACGTAAGGG
GCACGTACCC-
 A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACGTAAGGG
TBGCACGCAA---
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACGTAAGGG-
CAGGTAAGTAT
 A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CACGTAAGGG
GCACGTNC---
 A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACGTAAGGG
GCACGTGA---
 A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CACGTAAGGG
CACGTG----
 A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T A C G T

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACGTAAGGG
NCACGTGACN-
 A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C T G A C T G
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T