Information for 2-GTCCGCCATCTTG (Motif 2)

A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
Reverse Opposite:
A T G C C T G A C G T A T A C G C T G A A C G T A C T G A C T G A G T C T A C G A C T G G T C A A T G C
p-value:1e-17
log p-value:-4.007e+01
Information Content per bp:1.810
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.8 +/- 26.6bp
Average Position of motif in Background74.4 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:GTCCGCCATCTTG
-GCCGCCATCTTG
 A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:GTCCGCCATCTTG
-GCNGCCATCTTG
 A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GTCCGCCATCTTG
GTCCGCCATTA--
 A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCCGCCATCTTG
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCCGCCATCTTG
GCTCCGCCCMCY--
 A C G T A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTCCGCCATCTTG-
----GCCATCTGTT
 A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCCGCCATCTTG
TGTCTGDCACCT--
 A C G T A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCCGCCATCTTG
CTGTCTGTCACCT--
 A C G T A C G T A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTCCGCCATCTTG------
ANAGTGCCACCTGGTGGCCA
 A C G T A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

HINFP/MA0131.2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTCCGCCATCTTG
CAACGTCCGCGG-----
 A C G T A C G T A C G T A C G T A T C G A C G T A G T C A G T C A C T G A G T C A G T C C G T A A G C T A G T C C G A T A G C T A T C G
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T A C G T A C G T A C G T