Information for 9-GGCTCGCGGCCCG (Motif 19)

C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
Reverse Opposite:
G T A C C T A G T A C G A C T G T G A C A G T C A T C G A T G C C T A G T C G A A C T G A G T C A G T C
p-value:1e-12
log p-value:-2.862e+01
Information Content per bp:1.772
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.6 +/- 28.8bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCTCGCGGCCCG
GGCGCGCT-----
 C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Tcfl5/MA0632.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCTCGCGGCCCG
GGCACGTGCC---
 C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGCTCGCGGCCCG
ATAAAGGCGCGCGAT---
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCTCGCGGCCCG
GGCACGCGTC---
 C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGCTCGCGGCCCG
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGCTCGCGGCCCG
ATAAGGGCGCGCGAT---
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T A C G T A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGCTCGCGGCCCG
NCANGCGCGCGCGCCA
 A C G T A C G T A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCGCGGCCCG
TGGCAGNCTGCCAG
 A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCGCGGCCCG
GGGGGCGGGGCC--
 A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCGCGGCCCG
TGGCACGTGCCG--
 A C G T C T A G A C T G T A G C A C G T A G T C A T C G T A G C T C A G A C T G A G T C A T G C A G T C C A T G
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G A C G T A C G T