Information for 5-TCAGACGGCA (Motif 9)

A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
Reverse Opposite:
G A C T A C T G A T G C G T A C A C T G A C G T A G T C A C G T A C T G C T G A
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.849
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif57.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets53.5 +/- 24.6bp
Average Position of motif in Background44.0 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TCAGACGGCA
CCAGACAG--
 A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TCAGACGGCA
CCAGACRSVB
 A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----TCAGACGGCA--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCAGACGGCA
BCAGACWA--
 A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCAGACGGCA
AACAGATGGC-
 A C G T A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCAGACGGCA
ATGCCAGACN---
 A C G T A C G T A C G T A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCAGACGGCA---
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

POL002.1_INR/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCAGACGGCA
TCAGTCTT--
 A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCAGACGGCA-
TTTGCACACGGCAC
 A C G T A C G T A C G T A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A A C G T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCAGACGGCA
AACAGATGGT-
 A C G T A G C T A G T C C G T A A C T G G T C A A G T C C A T G A T C G G T A C C T G A
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T