Information for 7-ATGTGTTTGGCAG (Motif 9)

C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G
Reverse Opposite:
T A G C G A C T A T C G A G T C A G T C C G T A G T C A C G T A A T G C C G T A G T A C C G T A A C G T
p-value:1e-11
log p-value:-2.755e+01
Information Content per bp:1.836
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.6 +/- 22.0bp
Average Position of motif in Background50.8 +/- 51.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.68
Offset:6
Orientation:forward strand
Alignment:ATGTGTTTGGCAG
------TTGGCA-
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG-
-----NTTGGCANN
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG-
----NNTTGGCANN
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATGTGTTTGGCAG--
NNCTTTGTTTTGNTNNN
 A C G T A C G T C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG--
---TGATTGGCTANN
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG-
--BTGABTGACAGS
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG
-TGGGTGTGGC--
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G
A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG-
--NTGATTGACAGN
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG
-----CTTGGCAA
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ATGTGTTTGGCAG
----GGTTGGCAT
 C G T A A C G T A C T G A C G T A T C G C G A T A C G T A C G T A C T G A C T G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T