Information for 5-GTTTTAATCCATA (Motif 9)

A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
Reverse Opposite:
A C G T C G T A C G A T A T C G A C T G C G T A A C G T A C G T C G T A C G T A C G T A C G T A A T G C
p-value:1e-10
log p-value:-2.513e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.6 +/- 27.5bp
Average Position of motif in Background30.0 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1/MA0682.1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GTTTTAATCCATA
---TTAATCCC--
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTTTTAATCCATA
--TTTAAT-----
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTAATCCATA---
NTTGTTAATCCCTCTNN
 A C G T A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GTTTTAATCCATA
---TTAATCCT--
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GTTTTAATCCATA
--NYTAATCCYB-
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GTTTTAATCCATA
--CTTAATCCC--
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GTTTTAATCCATA-
----TAATCGATAA
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GTTTTAATCCATA
---YTAATCCY--
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAATCCATA--
NNNAATTAATCCCCNCN
 A C G T A C G T A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GTTTTAATCCATA
---TTAATCCG--
 A T C G A C G T A C G T A C G T A C G T C G T A C G T A A C G T G T A C A T G C C G T A C G A T C G T A
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T