Information for 4-GGAAGCTCCATCT (Motif 6)

A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
Reverse Opposite:
C G T A A C T G C T G A A C G T A C T G A C T G C G T A C T A G A T G C A C G T A C G T A G T C G T A C
p-value:1e-11
log p-value:-2.685e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 28.3bp
Average Position of motif in Background47.3 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGAAGCTCCATCT
GGAAATTCCC---
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGAAGCTCCATCT
GGAAANCCCC---
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGAAGCTCCATCT
NGAAGC-------
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGAAGCTCCATCT
GGAAATTCCC---
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGAAGCTCCATCT
ADGGYAGYAGCATCT
 A C G T A C G T A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAAGCTCCATCT
GGGAAATCCCCN--
 A C G T A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGAAGCTCCATCT--
---GGCTCYAKCAYC
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGAAGCTCCATCT
----GCTCCG---
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAAGCTCCATCT
GGAAATCCCC---
 A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGAAGCTCCATCT
ACCGGAAG--------
 A C G T A C G T A C G T A C T G A C T G C G T A C G T A A T C G A G T C A C G T A G T C A G T C T G C A A G C T A G T C A C G T
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T