Information for 12-DAAGACTAAR (Motif 19)

C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
Reverse Opposite:
A G C T C G A T G C A T T C G A A T C G A G C T G A T C G A C T A G C T G A T C
p-value:1e-8
log p-value:-1.901e+01
Information Content per bp:1.526
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif160.5
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets49.9 +/- 28.9bp
Average Position of motif in Background52.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-DAAGACTAAR
NGAAGC-----
 A C G T C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:DAAGACTAAR
BCAGACWA--
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:DAAGACTAAR
--AGGCCTNG
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

LEF1/MA0768.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:DAAGACTAAR-----
AAAGATCAAAGGGTT
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A A C G T A C G T A C G T A C G T A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----DAAGACTAAR--
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A C G T C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Tcf7/MA0769.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:DAAGACTAAR--
AAAGATCAAAGG
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A A C G T A C G T
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:DAAGACTAAR
-AAGGTCAC-
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:DAAGACTAAR
CAAGGHCANV
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:DAAGACTAAR-
-AAAACAAAGG
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:DAAGACTAAR
--AGGCCTAG
 C T A G T C G A C T G A C T A G T C G A T A G C A G C T C G T A G C T A T C G A
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G