Information for 20-AGGGCCACAGAGAGGC (Motif 39)

C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C
Reverse Opposite:
A C T G T A G C A T G C A C G T A G T C A C G T A G T C A C G T A C T G A C G T A C T G A C T G A G T C A G T C A G T C A G C T
p-value:1e-6
log p-value:-1.419e+01
Information Content per bp:1.923
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.8 +/- 25.9bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGGCCACAGAGAGGC
-AAACCACAGAN----
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGGCCACAGAGAGGC
NWAACCACADNN----
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGGGCCACAGAGAGGC--
---NNNACCGAGAGTNNN
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGGGCCACAGAGAGGC--
-AGGTCACGGAGAGGTCA
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C A C G T A C G T
A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGGGCCACAGAGAGGC
-----CACAGN-----
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGGGCCACAGAGAGGC
AGGGTAACAGC-----
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGGGCCACAGAGAGGC
-AAACCACAGC-----
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AGGGCCACAGAGAGGC---
-RGGTCADNNAGAGGTCAV
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C A C G T A C G T A C G T
A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:AGGGCCACAGAGAGGC--
------ACAAAGGNBCCT
 C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

REST/MA0138.2/Jaspar

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---AGGGCCACAGAGAGGC--
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C T G A A C T G C T A G A C T G A G T C A G T C C G T A A G T C C G T A A C T G C G T A A C T G C G T A A T C G A T C G G T A C A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C