Information for 19-AGTGGCAGACACAAMG (Motif 34)

G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
Reverse Opposite:
A G T C A C G T A C G T A C G T A T C G C A G T A C T G A C G T A G T C C G A T A T C G A T G C A T G C G C T A A T G C C A G T
p-value:1e-7
log p-value:-1.745e+01
Information Content per bp:1.729
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 20.0bp
Average Position of motif in Background50.2 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGTGGCAGACACAAMG
AGGTGHCAGACA-----
 A C G T G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGTGGCAGACACAAMG
AGGTGNCAGACAG----
 A C G T G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGTGGCAGACACAAMG
----CCAGACRSVB--
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGTGGCAGACACAAMG
----CCAGACAG----
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AGTGGCAGACACAAMG-
-------AAAACAAAGG
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGTGGCAGACACAAMG----
----AAACAGACAAAGGAAT
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGTGGCAGACACAAMG----
-----CTCACACAATGGCGC
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGTGGCAGACACAAMG
---TGCTGACTCA---
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGTGGCAGACACAAMG
----BCAGACWA----
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:AGTGGCAGACACAAMG-
-------VRRACAAWGG
 G C T A A T C G C A G T A T C G T A C G T A G C C G T A A C T G C G T A G T A C G C T A A T G C G T C A G T C A G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G