Information for 15-AGAGCCCAGCCAK (Motif 27)

G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
Reverse Opposite:
T G A C C G A T A C T G A T C G A G T C C G A T C T A G C T A G A C T G A T G C G A C T A G T C A C G T
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.719
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.99%
Number of Background Sequences with motif539.3
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets52.4 +/- 27.0bp
Average Position of motif in Background51.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGAGCCCAGCCAK
--TGCCCAGNHW-
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGCCCAGCCAK----
CAAATCCAGACATCACA
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGAGCCCAGCCAK
-----BCAGACWA
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGAGCCCAGCCAK
-----CCAGACAG
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGAGCCCAGCCAK-
--GGACCACCCACG
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G A C G T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGAGCCCAGCCAK
TGACANARRCCAGRC--
 A C G T A C G T A C G T A C G T G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGAGCCCAGCCAK
GGTTAGAGACCT-----
 A C G T A C G T A C G T A C G T G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAGCCCAGCCAK-
--GGCCCCGCCCCC
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G A C G T
A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AGAGCCCAGCCAK--
-----CCAGACRSVB
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGAGCCCAGCCAK
----CACAGN---
 G T C A T A C G C T G A A T C G T G A C A G T C A G T C G C T A A C T G A T G C G T A C G C T A A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T