Information for 11-WCCAGMCMRCSTSCCC (Motif 22)

C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G T A G C C G T A A T G C A C T G A G T C A C T G A C T G A C G T A G T C A C G T A C T G A C T G C G T A
p-value:1e-9
log p-value:-2.199e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.9 +/- 31.7bp
Average Position of motif in Background36.0 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:WCCAGMCMRCSTSCCC
-CCAGACAG-------
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:WCCAGMCMRCSTSCCC
-CCAGACRSVB-----
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--WCCAGMCMRCSTSCCC
ATGCCAGACN--------
 A C G T A C G T C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----WCCAGMCMRCSTSCCC
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:WCCAGMCMRCSTSCCC
-BCAGACWA-------
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:WCCAGMCMRCSTSCCC--
------CAACGTCCGCGG
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.54
Offset:11
Orientation:reverse strand
Alignment:WCCAGMCMRCSTSCCC-
-----------TCCCCA
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:WCCAGMCMRCSTSCCC
-TCAGNGAGCGTGAC-
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.52
Offset:10
Orientation:forward strand
Alignment:WCCAGMCMRCSTSCCC---
----------ATGCCCACC
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:WCCAGMCMRCSTSCCC
--CTGGCAGNCTGCCA
 C G A T A G T C A G T C C G T A A C T G T G C A A G T C G T A C C T A G A G T C A T C G C G A T A T C G A G T C A G T C A G T C
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A