Information for 6-GMCTSGCGSSTGSRAC (Motif 12)

A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
Reverse Opposite:
A C T G A G C T G A T C A T G C A G T C C G T A A T C G A T C G A G T C A C T G A G T C A T G C G T C A A T C G C A G T A G T C
p-value:1e-11
log p-value:-2.545e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.6 +/- 13.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GMCTSGCGSSTGSRAC
NAGANTGGCGGGGNGNA-
 A C G T A C G T A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A A C G T

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GMCTSGCGSSTGSRAC
----NNCGCGTGNN--
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
A C G T A C G T A C G T A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GMCTSGCGSSTGSRAC
CTGTCTGTCACCT-----
 A C G T A C G T A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GMCTSGCGSSTGSRAC
--NNGTCGCGTGNCAC
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
A C G T A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GMCTSGCGSSTGSRAC
TGTCTGDCACCT-----
 A C G T A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GMCTSGCGSSTGSRAC
-----GCGCCTGCGCA
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
A C G T A C G T A C G T A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GMCTSGCGSSTGSRAC
------TGCGTG----
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GMCTSGCGSSTGSRAC---
---TGCGGAGTGGGACTGG
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:GMCTSGCGSSTGSRAC
----GGCGCGCT----
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:GMCTSGCGSSTGSRAC
---TGGCACGTGCCA-
 A C T G G T C A A T G C A C G T A T C G A C T G A G T C A C T G A T G C A T G C A C G T A C T G A T C G C T A G C T G A A G T C
A C G T A C G T A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A A C G T