Information for 1-GRAAGGCARA (Motif 1)

A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A
Reverse Opposite:
C G A T A G C T G A C T A T C G A T G C A T G C A G C T C A G T A G T C G T A C
p-value:1e-12
log p-value:-2.974e+01
Information Content per bp:1.693
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif8.10%
Number of Background Sequences with motif1430.4
Percentage of Background Sequences with motif3.04%
Average Position of motif in Targets46.4 +/- 27.8bp
Average Position of motif in Background49.2 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0001.1_ETS_class/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GRAAGGCARA
ACCGGAAG-----
 A C G T A C G T A C G T A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T A C G T

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GRAAGGCARA--
GRAASTGAAAST
 A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A A C G T A C G T
T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GRAAGGCARA--
GGAAGTGAAAST
 A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A A C G T A C G T
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GRAAGGCARA-
CGGAAGTGAAAC
 A C G T A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A A C G T
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GRAAGGCARA---
AGGGAAGTCATTTCT
 A C G T A C G T A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GRAAGGCARA
AVCAGGAAGT----
 A C G T A C G T A C G T A C G T A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GRAAGGCARA--
GAAAGTGAAAGT
 A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A A C G T A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GRAAGGCARA
AGAGGAA------
 A C G T A C G T A C G T A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GRAAGGCARA--
GAAAMTGAAACT
 A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A A C G T A C G T
C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GRAAGGCARA
AACCGGAAGT----
 A C G T A C G T A C G T A C G T A C T G T C A G G T C A C T G A A T C G A T C G T A G C C T G A T C G A C G T A
T C G A C T G A T A G C T G A C T C A G T C A G C G T A C G T A T C A G A G C T A C G T A C G T A C G T A C G T