Information for 3-GHAAAHGTTGTCT (Motif 5)

A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T
Reverse Opposite:
C G T A T A C G C G T A A G T C C T G A C G T A G T A C C A G T C G A T C G A T C G A T C A G T T A G C
p-value:1e-10
log p-value:-2.527e+01
Information Content per bp:1.788
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.3 +/- 24.9bp
Average Position of motif in Background64.9 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.62
Offset:7
Orientation:forward strand
Alignment:GHAAAHGTTGTCT--
-------TWGTCTGV
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GHAAAHGTTGTCT---
-NNNCCATTGTGTNAN
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T A C G T
A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GHAAAHGTTGTCT
---CTCATTGTC-
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GHAAAHGTTGTCT----
-ANTCCTTTGTCTNNNN
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GHAAAHGTTGTCT
-----CTTTGT--
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GHAAAHGTTGTCT----
GGAAAAATTGTTAGGAA
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GHAAAHGTTGTCT--
------ATTGTTTAN
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GHAAAHGTTGTCT-
----CCATTGTTNY
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GHAAAHGTTGTCT--
-------CTGTCTGG
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GHAAAHGTTGTCT--
-----VBSYGTCTGG
 A T C G G C T A C G T A G C T A C G T A G C T A A C T G A C G T A G C T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G