Information for 2-CTCTSTCCGTGGTTCT (Motif 3)

A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T
Reverse Opposite:
T C G A A T C G C G T A C G T A A T G C A T G C T G C A A G T C A C T G A C T G C T G A A T G C C T G A T A C G C T G A C T A G
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.666
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 26.7bp
Average Position of motif in Background54.7 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTCTSTCCGTGGTTCT---
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCTSTCCGTGGTTCT--
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

GLIS3/MA0737.1/Jaspar

Match Rank:3
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTCTSTCCGTGGTTCT
CTTCGTGGGGGGTC--
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T
T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CTCTSTCCGTGGTTCT
CCTTCCTTCCTTCCTTCC
 A C G T A C G T A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T
A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CTCTSTCCGTGGTTCT------
-------BCNGGTTCTAGANCN
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CTCTSTCCGTGGTTCT-------
--------AGNGTTCTAATGANN
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.47
Offset:3
Orientation:forward strand
Alignment:CTCTSTCCGTGGTTCT
---CGTGGGTGGTCC-
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T
A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.46
Offset:2
Orientation:reverse strand
Alignment:CTCTSTCCGTGGTTCT---
--NNNTCCTTTGTTCTNNN
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.46
Offset:5
Orientation:reverse strand
Alignment:CTCTSTCCGTGGTTCT
-----NNTGTGGTTT-
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.45
Offset:2
Orientation:reverse strand
Alignment:CTCTSTCCGTGGTTCT
--CTGTTCCTGG----
 A G T C A G C T A T G C A G C T A T C G A G C T T G A C A G T C C T A G A C G T T A C G A T C G A C G T C G A T A T G C A G C T
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T