Information for 19-GGGATGGCTGCGCGAG (Motif 34)

A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
Reverse Opposite:
T A G C A G C T T A G C C T A G T G A C C T A G A G T C C G T A A C T G A G T C A G T C C G T A A G C T T A G C A G T C G T A C
p-value:1e-8
log p-value:-2.002e+01
Information Content per bp:1.758
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 23.9bp
Average Position of motif in Background47.3 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGGATGGCTGCGCGAG
GTCATGCHTGRCTGS-----
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GGGATGGCTGCGCGAG
-----NGCTN------
 A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGGATGGCTGCGCGAG
---TWGTCTGV-----
 A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GGGATGGCTGCGCGAG
------GCTGTG----
 A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GGGATGGCTGCGCGAG
TATTATGGGATGGATAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GGGATGGCTGCGCGAG
NGTCACGCTTGGCTGC-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGGATGGCTGCGCGAG
CAAGATGGCGGC-----
 A C G T A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGGATGGCTGCGCGAG
GGNGCGNCTGTTNNN-
 A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGGATGGCTGCGCGAG
CAAGATGGCGGC-----
 A C G T A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGGATGGCTGCGCGAG
-TAATGGCGGNC----
 A C T G A C T G A C T G C T G A C G A T C T A G A C T G A G T C A C G T A C T G A G T C A C T G G A T C A C T G T C G A A T C G
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T A C G T A C G T A C G T