Information for 12-GGGGTDAAGGAACTCC (Motif 20)

T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
Reverse Opposite:
C A T G A C T G C G T A A C T G G A C T G A C T A G T C G A T C A G C T C G A T G C T A C T G A T G A C G T A C A G T C A G T C
p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.578
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets53.2 +/- 23.8bp
Average Position of motif in Background44.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTDAAGGAACTCC
NTNNNGGGGTCANGNNN----
 A C G T A C G T A C G T A C G T A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGGGTDAAGGAACTCC
-GGGTCAACGAGTTCA
 T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
A C G T C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTDAAGGAACTCC
CTCCAGGGGTCAATTGA----
 A C G T A C G T A C G T A C G T A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTDAAGGAACTCC
GGCGAGGGGTCAAGGGC----
 A C G T A C G T A C G T A C G T A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTDAAGGAACTCC
AGAGCGGGGTCAAGTA-----
 A C G T A C G T A C G T A C G T A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GGGGTDAAGGAACTCC
NTNTGGGGGGTCNNNA------
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGGGTDAAGGAACTCC
AGRGGTCA---------
 A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGGGTDAAGGAACTCC---
NGAGGTCANNGAGTTCANNN
 A C G T T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GGGGTDAAGGAACTCC
-AGGTCANTGACCTN-
 T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T

Spz1/MA0111.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGGGTDAAGGAACTCC
AGGGTAACAGC-----
 T C A G C T A G A C T G A C T G G A C T C G A T C G T A T C G A C T A G T C A G C T G A C T G A T G A C G C A T A G T C G T A C
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T A C G T