Information for 13-GKCCTGGRTSWCT (Motif 26)

A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
Reverse Opposite:
C G T A A C T G C G A T A T G C T G C A G A T C A T G C A G T C C G T A A C T G C T A G G T A C T A G C
p-value:1e-9
log p-value:-2.146e+01
Information Content per bp:1.739
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif127.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets47.0 +/- 22.7bp
Average Position of motif in Background49.6 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GKCCTGGRTSWCT
AGGCCTAG------
 A C G T A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GKCCTGGRTSWCT
GGTCTGGCAT---
 A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GKCCTGGRTSWCT--
TGCCTGCGYCMCCTT
 A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T A C G T A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GKCCTGGRTSWCT
AGGCCTNG------
 A C G T A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GKCCTGGRTSWCT--
GTCATGCHTGRCTGS
 A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GKCCTGGRTSWCT
--GCTGTG-----
 A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------GKCCTGGRTSWCT
GGGGCCGAGGCCTG-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GKCCTGGRTSWCT--
---BTGABTGACAGS
 A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GKCCTGGRTSWCT----
---CTGGCAGNCTGCCA
 A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GKCCTGGRTSWCT
CTGTCTGG------
 A C G T A T C G C A T G A G T C A G T C A C G T A C T G A T C G C T A G A C G T A T C G C G T A A G T C C G A T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T