Information for 2-CCACTAGGKGGCG (Motif 2)

A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
Reverse Opposite:
G A T C A C T G A T G C A G T C G T A C A G T C A G T C G C A T C T G A A T C G A C G T A C T G T C A G
p-value:1e-48
log p-value:-1.124e+02
Information Content per bp:1.696
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif7.08%
Number of Background Sequences with motif179.1
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets52.4 +/- 25.6bp
Average Position of motif in Background49.0 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGKGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGKGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGKGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGKGGCG-----
-NNNAAGGGGGCGGGNNN
 A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGKGGCG
CACCCCCGGGGGGG-
 A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGKGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGKGGCG
NCCCCCCCGGGGGGN
 A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGGKGGCG
CACAGCAGGGGG--
 A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGKGGCG
ACCCCCCCGGGGGGN
 A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGKGGCG
GCACCCCTGGGTGCC-
 A C G T A C G T A C G T A G T C G T A C G T C A A T G C G A C T C G T A C T A G T C A G C A T G C T A G T A C G T G A C C T A G
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C A C G T