Information for 13-ATGCAGCCAG (Motif 13)

G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
Reverse Opposite:
A G T C G A C T T C A G C T A G T G A C G C A T C T A G A T G C C G T A C G A T
p-value:1e-10
log p-value:-2.387e+01
Information Content per bp:1.666
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.98%
Number of Background Sequences with motif927.5
Percentage of Background Sequences with motif2.05%
Average Position of motif in Targets52.8 +/- 25.5bp
Average Position of motif in Background49.2 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATGCAGCCAG
--BCAGACWA
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATGCAGCCAG
---CAGCC--
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ATGCAGCCAG
--CCAGACAG
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATGCAGCCAG
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A C G T G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATGCAGCCAG-------
--SCAGYCADGCATGAC
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ATGCAGCCAG---
---ATGCCAGACN
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

DMRT3/MA0610.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATGCAGCCAG
AATGTATCAAT
 A C G T G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:ATGCAGCCAG
----TGCCAA
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ATGCAGCCAG--
--CCAGACRSVB
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0077.1_Spdef_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATGCAGCCAG------
GTACATCCGGATTTTT
 G C T A G C A T T A C G G A T C C G T A A C T G G A T C A G T C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T