Information for 5-AGCAGCCAAGCCCGGC (Motif 12)

C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C T G A C T G A T G C A C G T A C T G A G T C A G C T
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.867
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.6 +/- 19.1bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGCAGCCAAGCCCGGC
-SCAGYCADGCATGAC
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCAGCCAAGCCCGGC
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCAGCCAAGCCCGGC-
-GCAGCCAAGCGTGACN
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGCAGCCAAGCCCGGC
---GGCCACRCCCMK-
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
A C G T A C G T A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGCAGCCAAGCCCGGC
GNNAGCTAATCCCCCN
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AGCAGCCAAGCCCGGC
------AAATCACTGC
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGCAGCCAAGCCCGGC
--NNGCNCTGCGCGGC
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C
A C G T A C G T T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:AGCAGCCAAGCCCGGC----
------CAGGCCNNGGCCNN
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGCAGCCAAGCCCGGC---
----TCCCAGMCRAGCCCC
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Klf12/MA0742.1/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AGCAGCCAAGCCCGGC--
---GACCACGCCCTTATT
 C T G A A C T G G T A C G T C A A T C G A G T C T A G C C G T A C G T A A C T G A G T C A G T C G T A C C T A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T