Information for 25-ACAAACAAAAGAA (Motif 29)

C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T A C T G A C G T
p-value:1e-1
log p-value:-3.936e+00
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif375.0
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets73.0 +/- 0.0bp
Average Position of motif in Background51.2 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACAAACAAAAGAA
-AAAACAAAGG--
 C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ACAAACAAAAGAA-
AACAAACAACAAGAG
 A C G T C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACAAACAAAAGAA--
ATAAGAACAAAGGACTA
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACAAACAAAAGAA--
AGAAGAACAAAGGACTA
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACAAACAAAAGAA-
AAACAGACAAAGGAAT
 A C G T A C G T C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ACAAACAAAAGAA
AGAAACGAAAGT-
 C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACAAACAAAAGAA
AAAGTAAACAAAAATT
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ACAAACAAAAGAA
---RACAAWGG--
 C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACAAACAAAAGAA-----
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ACAAACAAAAGAA
--RAACAATGGN-
 C G T A A G T C C G T A C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C T G C G T A C G T A
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T