Information for 23-AAAGGGATTAAGGCAA (Motif 35)

G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
Reverse Opposite:
C G A T C A G T T A C G G T A C G A T C C G A T A C G T C G T A G T C A A G C T A G T C G T A C G A T C A G C T A G C T C A G T
p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.671
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif57.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets43.9 +/- 28.9bp
Average Position of motif in Background51.8 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0126.1_Obox6/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGATTAAGGCAA
AAAAACGGATTATTG---
 A C G T A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGATTAAGGCAA
TTAGAGGGATTAACAAT-
 A C G T A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAAGGGATTAAGGCAA
NANAGGGATTAATTATN
 A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0035.1_Gsc/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAAGGGATTAAGGCAA
NNAAGGGATTAACGANT
 A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

Dmbx1/MA0883.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGATTAAGGCAA
TGAACCGGATTAATGAA-
 A C G T A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGATTAAGGCAA
TGAACCGGATTAATGAA-
 A C G T A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAAGGGATTAAGGCAA
TAGAGGGATTAAATTTC
 A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AAAGGGATTAAGGCAA
--VRGGATTARN----
 G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGATTAAGGCAA
TTAAGGGGATTAACTAC-
 A C G T A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAAGGGATTAAGGCAA
AAAAACCATTAAGG---
 A C G T G C T A T C G A C T G A C T A G C A T G T C A G C T G A A C G T G C A T G T C A C G T A C T A G A C T G A T G C G C T A C G T A
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T A C G T A C G T