Information for 13-GGATCTTAAGCCA (Motif 24)

A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
Reverse Opposite:
C G A T A C T G T C A G G A T C G A C T C G A T G T C A G T C A C T A G G C T A C G A T G T A C A T G C
p-value:1e-11
log p-value:-2.616e+01
Information Content per bp:1.680
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif249.4
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets57.7 +/- 25.5bp
Average Position of motif in Background49.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGATCTTAAGCCA
----CTTAATCCC
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GGATCTTAAGCCA
-----TTAATCCC
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GGATCTTAAGCCA
-----ATAATCCC
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGATCTTAAGCCA-
------TAATCCCN
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGATCTTAAGCCA-
----NYTAATCCYB
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A A C G T
A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGATCTTAAGCCA
----GCTAATCC-
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGATCTTAAGCCA
GRTGMTRGAGCC-
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGATCTTAAGCCA
-----TTAATCCT
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGATCTTAAGCCA
RSCACTYRAG---
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGATCTTAAGCCA----
GNNNATTAATCCCTNCN
 A T C G C A T G G C T A C G A T A G T C A C G T C A G T C G T A C G T A C T A G A G T C G T A C G C T A A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A