Information for 12-GCAATTAACA (Motif 23)

A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
Reverse Opposite:
C G A T A T C G A G C T A C G T C G T A C G T A C A G T A C G T A C T G T G A C
p-value:1e-11
log p-value:-2.644e+01
Information Content per bp:1.761
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif199.7
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets48.5 +/- 23.6bp
Average Position of motif in Background50.9 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCAATTAACA
GCACTTAA--
 A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GCAATTAACA--
ACCGGCAATTAATAAA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCAATTAACA
BCMATTAG--
 A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAACA
CCAATTAA--
 A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAACA
CCAATTAA--
 A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCAATTAACA
ACCAATTAGC-
 A C G T A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T

HESX1/MA0894.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTAACA
NCCAATTANC-
 A C G T A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAATTAACA
CCAATTAG--
 A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

RAX/MA0718.1/Jaspar

Match Rank:9
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCAATTAACA
GCCAATTAAC-
 A C G T A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTAACA
NNCAATTANN-
 A C G T A C T G A G T C C G T A G T C A C G A T C G A T G T C A C T G A A T G C C G T A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T