Information for 4-AAGGTGCCAAATTCCT (Motif 12)

C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
Reverse Opposite:
C G T A C T A G A C T G G T C A C G T A A C G T A C G T A C G T C T A G C T A G A G T C C G T A A G T C G T A C A C G T C G A T
p-value:1e-13
log p-value:-3.213e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 23.0bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
--GGTGCCAAGT----
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
AAGGTGTGAAA-----
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
AAGGTGTKAA------
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AAGGTGCCAAATTCCT
GAAAAGGTGTGAAAATT--
 A C G T A C G T A C G T C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAGGTGCCAAATTCCT
-AGGTGTTAAT-----
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
-AGGTGTCA-------
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
-AGGTGTGAAA-----
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
AAGGTGTGAAAAT---
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
-AGGTGTGAAM-----
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGGTGCCAAATTCCT
--CGTGCCAAG-----
 C G T A C G T A C A T G A C T G A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G A T C A G T A G T C A G T C C G A T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T