Information for 2-TTGTTATGCA (Motif 3)

A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A
Reverse Opposite:
C G A T C T A G T G A C G C T A G C A T C T G A C T G A A T G C C G T A T C G A
p-value:1e-15
log p-value:-3.639e+01
Information Content per bp:1.664
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.53%
Number of Background Sequences with motif559.6
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets47.8 +/- 24.3bp
Average Position of motif in Background48.3 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TTGTTATGCA---
CTTTGTTATGCAAAT
 A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TTGTTATGCA---
CATTGTTATGCAAAT
 A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0123.1_Foxl1_2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTATGCA--
NNTTTTGTTTTGATNT
 A C G T A C G T A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTGTTATGCA--
--RTTATGYAAB
 A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T
A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGTTATGCA------
TNNATTATGCATANNTT
 A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTGTTATGCA--
GTNTTGTTGTGANNT
 A C G T A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTATGCA---
NNCTTTGTTTTGNTNNN
 A C G T A C G T A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTGTTATGCA-
TAATTGTTCTAAAC
 A C G T A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

CEBPA/MA0102.3/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGTTATGCA--
-NATTGTGCAAT
 A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T A C G T
A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTATGCA-
NCNTTTGTTATTTNN
 A C G T A C G T A C G T A C G T A G C T G C A T T A C G G A C T G A C T C G T A C G A T A C T G G A T C C G T A A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T