Information for 1-NVMNYTAATCCYY (Motif 1)

G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
Reverse Opposite:
C T A G C T A G C T A G A C T G G T C A A C G T A C G T C G T A C T A G A T G C C A T G A T C G C T A G
p-value:1e-98
log p-value:-2.260e+02
Information Content per bp:1.575
Number of Target Sequences with motif199.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1822.6
Percentage of Background Sequences with motif3.88%
Average Position of motif in Targets50.5 +/- 21.6bp
Average Position of motif in Background50.3 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.95
Offset:3
Orientation:forward strand
Alignment:NVMNYTAATCCYY
---NYTAATCCYB
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.94
Offset:3
Orientation:forward strand
Alignment:NVMNYTAATCCYY
---GCTAATCC--
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.94
Offset:3
Orientation:forward strand
Alignment:NVMNYTAATCCYY
---CTTAATCCC-
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.93
Offset:4
Orientation:forward strand
Alignment:NVMNYTAATCCYY
----TTAATCCC-
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.93
Offset:4
Orientation:reverse strand
Alignment:NVMNYTAATCCYY
----YTAATCCY-
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.93
Offset:4
Orientation:forward strand
Alignment:NVMNYTAATCCYY
----TTAATCCT-
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.91
Offset:4
Orientation:forward strand
Alignment:NVMNYTAATCCYY
----TTAATCCG-
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.91
Offset:3
Orientation:forward strand
Alignment:NVMNYTAATCCYY
---GCTAATCCCC
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.91
Offset:3
Orientation:forward strand
Alignment:NVMNYTAATCCYY
---CCTAATCCGC
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.90
Offset:5
Orientation:forward strand
Alignment:NVMNYTAATCCYY
-----TAATCCCN
 G A T C T A G C G T A C T A C G G A T C C G A T C G T A C G T A A C G T A G T C A G T C G A T C G A T C
A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G