Information for 2-CCYCCTGCTGDGVHVN (Motif 3)

T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
Reverse Opposite:
T A C G A T G C C A G T A C T G G T A C G T A C A T G C C G T A A T C G A G T C C T G A A T C G C T A G C T A G C T A G A T C G
p-value:1e-64
log p-value:-1.480e+02
Information Content per bp:1.582
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif15.69%
Number of Background Sequences with motif901.1
Percentage of Background Sequences with motif1.91%
Average Position of motif in Targets48.7 +/- 22.4bp
Average Position of motif in Background49.6 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGDGVHVN
CCCCCTGCTGTG----
 T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGDGVHVN
GGCCYCCTGCTGDGH---
 A C G T A C G T T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGDGVHVN
TNTCCTGCTGTGNNG-
 T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGDGVHVN
TCNCCTGCTGNGNNN-
 T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.87
Offset:3
Orientation:forward strand
Alignment:CCYCCTGCTGDGVHVN
---CCTGCTGAGH---
 T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGDGVHVN
NNTCCTGCTGTGNNN-
 T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGDGVHVN
GACCCCCCGCTGTG----
 A C G T A C G T T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGDGVHVN
GACCCCCCGCTGTGC---
 A C G T A C G T T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGDGVHVN
GACCCCCCGCTGCGC---
 A C G T A C G T T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCYCCTGCTGDGVHVN
---CCAGCTGTTN---
 T A G C G A T C G A T C A G T C A T G C G A C T C T A G A T G C G C A T A T C G C A T G C A T G T G A C G T C A T A C G A G T C
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T A C G T